Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Selaginella: 128850 | |
Cluster | HCCA clusters: Cluster_150 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At4g14820 | No alias | Pentatricopeptide repeat-containing protein At4g14820... | 0.03 | Orthogroups_2024-Update | |
Bradi1g14160 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g72290 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g04723 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g09441 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g40131 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi4g20810 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.E03135.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.E03381.1 | No alias | RNA editing factor *(MEF19) | 0.03 | Orthogroups_2024-Update | |
Brara.F03378.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Glyma.02G160400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G032070.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G064880.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G080660.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU5Hr1G040610.4 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU5Hr1G047290.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU7Hr1G038460.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os04g53630 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00001133-RA | No alias | (at2g03880 : 550.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00003567-RA | No alias | (at4g13650 : 593.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00017819-RA | No alias | (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056153-RA | No alias | (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
Seita.1G205700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.1G290500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.4G225800.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.5G124400.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
Seita.8G017200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G282300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G030100.1 | No alias | RNA editing factor *(CWM1) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predicted GO |
MF | GO:0004725 | protein tyrosine phosphatase activity | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Predicted GO |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0006470 | protein dephosphorylation | IEP | Predicted GO |
CC | GO:0008023 | transcription elongation factor complex | IEP | Predicted GO |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
CC | GO:0044451 | nucleoplasm part | IEP | Predicted GO |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 617 | 666 |
IPR002885 | Pentatricopeptide_repeat | 720 | 767 |
IPR002885 | Pentatricopeptide_repeat | 405 | 452 |
IPR002885 | Pentatricopeptide_repeat | 515 | 544 |
IPR002885 | Pentatricopeptide_repeat | 485 | 505 |
IPR002885 | Pentatricopeptide_repeat | 896 | 924 |
IPR002885 | Pentatricopeptide_repeat | 114 | 143 |
IPR002885 | Pentatricopeptide_repeat | 213 | 237 |
No external refs found! |