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  5. 134581

134581


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 134581
Cluster HCCA clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
At3g09040 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.02 Orthogroups_2024-Update
At4g33990 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G158200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_11074g0010 No alias (at3g57430 : 561.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_465411g0010 No alias (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00006196-RA No alias (at1g11290 : 685.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.015G018700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Sobic.001G025800.1 No alias RNA editing factor *(CRR22) 0.01 Orthogroups_2024-Update
Sobic.002G007000.2 No alias RNA editing factor *(ELI1) 0.01 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc11g008940 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 434 454
IPR002885 Pentatricopeptide_repeat 360 388
IPR002885 Pentatricopeptide_repeat 74 100
IPR002885 Pentatricopeptide_repeat 537 558
IPR002885 Pentatricopeptide_repeat 46 67
IPR002885 Pentatricopeptide_repeat 203 229
IPR002885 Pentatricopeptide_repeat 234 261
IPR002885 Pentatricopeptide_repeat 137 162
IPR002885 Pentatricopeptide_repeat 168 193
IPR002885 Pentatricopeptide_repeat 332 355
IPR002885 Pentatricopeptide_repeat 296 322
IPR002885 Pentatricopeptide_repeat 105 132
IPR032867 DYW_dom 638 761
IPR002885 Pentatricopeptide_repeat 462 510
No external refs found!