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  4. Sequence
  5. 136134

136134


Description : mitochondrial editing factor 22


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 136134
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
At3g47530 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.02 Orthogroups_2024-Update
At4g30700 No alias MEF29 [Source:UniProtKB/TrEMBL;Acc:A0A178UUW3] 0.03 Orthogroups_2024-Update
At4g33170 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Orthogroups_2024-Update
Bradi1g21907 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os04g14450 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_16457g0010 No alias (at2g22070 : 558.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_767209g0010 No alias (at3g49170 : 650.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
PSME_00001035-RA No alias (at1g16480 : 699.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00022685-RA No alias (at3g46790 : 552.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
Sobic.005G110550.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 196 242
IPR002885 Pentatricopeptide_repeat 395 441
IPR002885 Pentatricopeptide_repeat 94 142
IPR032867 DYW_dom 598 706
IPR002885 Pentatricopeptide_repeat 300 325
IPR002885 Pentatricopeptide_repeat 272 298
IPR002885 Pentatricopeptide_repeat 541 564
IPR002885 Pentatricopeptide_repeat 469 493
IPR002885 Pentatricopeptide_repeat 1 26
IPR002885 Pentatricopeptide_repeat 69 93
IPR002885 Pentatricopeptide_repeat 369 394
No external refs found!