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  5. 144158

144158


Description : U5 small nuclear ribonucleoprotein helicase, putative


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 144158
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
A4A49_16477 No alias dexh-box atp-dependent rna helicase dexh12 0.03 Orthogroups_2024-Update
At1g20960 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Orthogroups_2024-Update
At3g27730 No alias DNA helicase ROCK-N-ROLLERS... 0.02 Orthogroups_2024-Update
Glyma.06G202500 No alias U5 small nuclear ribonucleoprotein helicase 0.03 Orthogroups_2024-Update
Glyma.08G173500 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.04 Orthogroups_2024-Update
Kfl00102_0100 kfl00102_0100_v1.1 (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update
LOC_Os03g11470 No alias DEAD/DEAH box helicase domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp7g00250.1 No alias RNA helicase (Brr2) 0.02 Orthogroups_2024-Update
PSME_00051380-RA No alias (at1g20960 : 1382.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update
Pp1s28_172V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.1G005500.1 No alias RNA helicase *(Brr2) 0.04 Orthogroups_2024-Update
evm.model.contig_4401.1 No alias (at3g27730 : 193.0) DNA helicase required for... 0.01 Orthogroups_2024-Update
evm.model.contig_564.1 No alias (at1g20960 : 540.0) embryo defective 1507 (emb1507);... 0.01 Orthogroups_2024-Update
evm.model.tig00000865.27 No alias (at1g20960 : 291.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
evm.model.tig00000865.28 No alias (at1g20960 : 1091.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004725 protein tyrosine phosphatase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 1347 1516
IPR004179 Sec63-dom 1000 1302
IPR004179 Sec63-dom 1830 2143
IPR011545 DEAD/DEAH_box_helicase_dom 501 677
IPR001650 Helicase_C 732 876
No external refs found!