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  5. 154282

154282


Description : U1 small nuclear ribonucleoprotein-70K


Gene families : OG_42_0004628 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004628_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 154282
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bradi3g30430 No alias U1 small nuclear ribonucleoprotein-70K 0.02 Orthogroups_2024-Update
Brara.G01232.1 No alias component *(U1-70K) of U1 snRNP complex 0.02 Orthogroups_2024-Update
Mp1g03510.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 Orthogroups_2024-Update
PSME_00019787-RA No alias (at3g50670 : 296.0) Encodes U1 snRNP 70K; U1 small... 0.04 Orthogroups_2024-Update
Pp1s332_45V6 No alias u1 snrnp 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0007033 vacuole organization IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:1905037 autophagosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 34 79
No external refs found!