Description : Ribosomal protein L13 family protein
Gene families : OG_42_0002020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002020_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Selaginella: 166650 | |
Cluster | HCCA clusters: Cluster_87 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_14824 | No alias | 60s ribosomal protein l13a-4 | 0.05 | Orthogroups_2024-Update | |
A4A49_55645 | No alias | 60s ribosomal protein l13a-4 | 0.11 | Orthogroups_2024-Update | |
At3g07110 | No alias | Ribosomal protein L13 family protein... | 0.03 | Orthogroups_2024-Update | |
At4g13170 | No alias | 60S ribosomal protein L13a-3... | 0.07 | Orthogroups_2024-Update | |
Bradi1g08260 | No alias | Ribosomal protein L13 family protein | 0.09 | Orthogroups_2024-Update | |
Bradi1g59280 | No alias | Ribosomal protein L13 family protein | 0.04 | Orthogroups_2024-Update | |
Brara.B03455.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Brara.C03976.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
Brara.F02982.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.16 | Orthogroups_2024-Update | |
Brara.G00660.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.16 | Orthogroups_2024-Update | |
Brara.I00372.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.16 | Orthogroups_2024-Update | |
Brara.I01172.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.12 | Orthogroups_2024-Update | |
Cre12.g532550 | No alias | Ribosomal protein L13 family protein | 0.18 | Orthogroups_2024-Update | |
Glyma.08G353900 | No alias | Ribosomal protein L13 family protein | 0.05 | Orthogroups_2024-Update | |
Glyma.08G354000 | No alias | Ribosomal protein L13 family protein | 0.09 | Orthogroups_2024-Update | |
Glyma.09G024000 | No alias | Ribosomal protein L13 family protein | 0.13 | Orthogroups_2024-Update | |
Glyma.16G092800 | No alias | Ribosomal protein L13 family protein | 0.04 | Orthogroups_2024-Update | |
HORVU2Hr1G063880.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
HORVU5Hr1G096060.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
Kfl00360_0020 | kfl00360_0020_v1.1 | (at3g07110 : 303.0) Ribosomal protein L13 family... | 0.04 | Orthogroups_2024-Update | |
LOC_Os03g54890 | No alias | ribosomal protein L13, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_186340g0010 | No alias | (at3g24830 : 331.0) Ribosomal protein L13 family... | 0.08 | Orthogroups_2024-Update | |
Mp2g08690.1 | No alias | component RPL13a of LSU proteome component | 0.04 | Orthogroups_2024-Update | |
PSME_00002229-RA | No alias | (at3g24830 : 323.0) Ribosomal protein L13 family... | 0.09 | Orthogroups_2024-Update | |
Potri.002G242600 | No alias | Ribosomal protein L13 family protein | 0.08 | Orthogroups_2024-Update | |
Potri.017G054600 | No alias | Ribosomal protein L13 family protein | 0.03 | Orthogroups_2024-Update | |
Pp1s165_40V6 | No alias | 60s ribosomal protein | 0.2 | Orthogroups_2024-Update | |
Pp1s174_48V6 | No alias | 60s ribosomal protein | 0.21 | Orthogroups_2024-Update | |
Pp1s63_162V6 | No alias | 60s ribosomal protein | 0.15 | Orthogroups_2024-Update | |
Pp1s75_223V6 | No alias | 60s ribosomal protein | 0.06 | Orthogroups_2024-Update | |
Pp1s80_110V6 | No alias | 60s ribosomal protein | 0.23 | Orthogroups_2024-Update | |
Seita.9G087700.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.18 | Orthogroups_2024-Update | |
Sobic.001G085400.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.17 | Orthogroups_2024-Update | |
Sobic.009G022400.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
Solyc05g053670 | No alias | 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... | 0.14 | Orthogroups_2024-Update | |
Solyc09g091740 | No alias | 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... | 0.14 | Orthogroups_2024-Update | |
Solyc12g098330 | No alias | 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... | 0.11 | Orthogroups_2024-Update | |
Sopen05g032170 | No alias | Ribosomal protein L13 | 0.2 | Orthogroups_2024-Update | |
Sopen09g034630 | No alias | Ribosomal protein L13 | 0.18 | Orthogroups_2024-Update | |
Sopen12g033110 | No alias | Ribosomal protein L13 | 0.1 | Orthogroups_2024-Update | |
evm.model.contig_3478.11 | No alias | (at3g24830 : 235.0) Ribosomal protein L13 family... | 0.22 | Orthogroups_2024-Update | |
evm.model.tig00000792.29 | No alias | (at3g24830 : 242.0) Ribosomal protein L13 family... | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001671 | ATPase activator activity | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
BP | GO:0006177 | GMP biosynthetic process | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity | IEP | Predicted GO |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009163 | nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
CC | GO:0009349 | riboflavin synthase complex | IEP | Predicted GO |
CC | GO:0009507 | chloroplast | IEP | Predicted GO |
CC | GO:0009536 | plastid | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Predicted GO |
MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Predicted GO |
MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | Predicted GO |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
MF | GO:0031072 | heat shock protein binding | IEP | Predicted GO |
CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
MF | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0042451 | purine nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0042455 | ribonucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
BP | GO:0046037 | GMP metabolic process | IEP | Predicted GO |
BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046129 | purine ribonucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901070 | guanosine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005822 | Ribosomal_L13 | 12 | 121 |
No external refs found! |