171051


Description : fibrillarin 2


Gene families : OG_42_0002666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002666_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 171051
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
A4A49_36833 No alias mediator of rna polymerase ii transcription subunit 36a 0.02 Orthogroups_2024-Update
At4g25630 No alias Mediator of RNA polymerase II transcription subunit 36a... 0.05 Orthogroups_2024-Update
Bradi1g32010 No alias fibrillarin 1 0.07 Orthogroups_2024-Update
Bradi3g55810 No alias fibrillarin 2 0.1 Orthogroups_2024-Update
Brara.A01555.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.06 Orthogroups_2024-Update
Brara.H01568.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.11 Orthogroups_2024-Update
Brara.K00184.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.13 Orthogroups_2024-Update
Glyma.11G237200 No alias fibrillarin 2 0.02 Orthogroups_2024-Update
HORVU6Hr1G091860.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.11 Orthogroups_2024-Update
HORVU7Hr1G108780.2 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.05 Orthogroups_2024-Update
Kfl00029_0080 kfl00029_0080_v1.... (at4g25630 : 404.0) encodes a fibrillarin, a key... 0.02 Orthogroups_2024-Update
PSME_00028304-RA No alias (at5g52470 : 208.0) encodes a fibrillarin, a key... 0.06 Orthogroups_2024-Update
Potri.015G147500 No alias fibrillarin 1 0.06 Orthogroups_2024-Update
Pp1s177_5V6 No alias loc398434 protein 0.03 Orthogroups_2024-Update
Pp1s54_67V6 No alias L73G19.10; fibrillarin 2 (FIB2) [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Seita.1G370900.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.04 Orthogroups_2024-Update
Sobic.004G349700.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.05 Orthogroups_2024-Update
Solyc03g025270 No alias fibrillarin 2 (AHRD V3.3 *** AT4G25630.1) 0.02 Orthogroups_2024-Update
Sopen03g004100 No alias Fibrillarin 0.04 Orthogroups_2024-Update
evm.model.contig_595.1 No alias (at5g52470 : 361.0) encodes a fibrillarin, a key... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004834 tryptophan synthase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000692 Fibrillarin 60 285
No external refs found!