268639

Description : Nucleic acid-binding, OB-fold-like protein

Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 268639
Cluster	HCCA clusters: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
A4A49_60485	No alias	40s ribosomal protein s11	0.05	Orthogroups_2024-Update
At3g48930	No alias	40S ribosomal protein S11-1...	0.04	Orthogroups_2024-Update
Bradi5g21630	No alias	Nucleic acid-binding, OB-fold-like protein	0.07	Orthogroups_2024-Update
Brara.A02200.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.B03705.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.F01642.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.F02607.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.I00599.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Cre12.g514500	No alias	Nucleic acid-binding, OB-fold-like protein	0.1	Orthogroups_2024-Update
GRMZM2G019325	No alias	ribosomal protein S11-beta	0.05	Orthogroups_2024-Update
GRMZM2G044800	No alias	ribosomal protein S11-beta	0.04	Orthogroups_2024-Update
Glyma.09G094200	No alias	ribosomal protein S11-beta	0.03	Orthogroups_2024-Update
Glyma.13G165200	No alias	ribosomal protein S11-beta	0.08	Orthogroups_2024-Update
Glyma.17G105900	No alias	ribosomal protein S11-beta	0.02	Orthogroups_2024-Update
HORVU2Hr1G099230.8	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
HORVU6Hr1G056610.7	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Kfl00435_0080	kfl00435_0080_v1.1	(p17093\|rs11_soybn : 243.0) 40S ribosomal protein S11 -...	0.06	Orthogroups_2024-Update
MA_19350g0010	No alias	(at3g48930 : 247.0) embryo defective 1080 (EMB1080);...	0.04	Orthogroups_2024-Update
Potri.002G140400	No alias	ribosomal protein S11-beta	0.03	Orthogroups_2024-Update
Potri.014G053300	No alias	ribosomal protein S11-beta	0.1	Orthogroups_2024-Update
Potri.018G115400	No alias	ribosomal protein S11-beta	0.03	Orthogroups_2024-Update
Pp1s21_269V6	No alias	40s ribosomal protein s11	0.11	Orthogroups_2024-Update
Pp1s30_89V6	No alias	40s ribosomal protein s11	0.08	Orthogroups_2024-Update
Pp1s51_307V6	No alias	40s ribosomal protein s11	0.06	Orthogroups_2024-Update
Pp1s79_58V6	No alias	40s ribosomal protein s11	0.04	Orthogroups_2024-Update
Seita.1G231100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Seita.7G157100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Seita.7G234800.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Sobic.004G213200.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.006G138100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Sobic.006G213000.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Solyc06g073790	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.08	Orthogroups_2024-Update
Solyc06g073800	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.08	Orthogroups_2024-Update
Solyc12g042080	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.05	Orthogroups_2024-Update
Sopen06g030190	No alias	Ribosomal protein S17	0.08	Orthogroups_2024-Update
Sopen12g021180	No alias	Ribosomal protein S17	0.07	Orthogroups_2024-Update
evm.model.contig_3727.5	No alias	(at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like...	0.09	Orthogroups_2024-Update
evm.model.tig00000551.22	No alias	(p17093\|rs11_soybn : 211.0) 40S ribosomal protein S11 -...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predicted GO
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predicted GO
CC	GO:0005839	proteasome core complex	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006553	lysine metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008837	diaminopimelate epimerase activity	IEP	Predicted GO
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009085	lysine biosynthetic process	IEP	Predicted GO
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
MF	GO:0016854	racemase and epimerase activity	IEP	Predicted GO
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Predicted GO
MF	GO:0019829	cation-transporting ATPase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predicted GO
CC	GO:0030880	RNA polymerase complex	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
MF	GO:0034061	DNA polymerase activity	IEP	Predicted GO
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Predicted GO
MF	GO:0036442	proton-exporting ATPase activity	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predicted GO
BP	GO:0046451	diaminopimelate metabolic process	IEP	Predicted GO
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Predicted GO
MF	GO:0047661	amino-acid racemase activity	IEP	Predicted GO
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0070003	threonine-type peptidase activity	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR032440	Ribosomal_S11_N	4	72
IPR000266	Ribosomal_S17/S11	74	142

External Links

No external refs found!

268639

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation