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  5. 26969

26969


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 26969
Cluster HCCA clusters: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
81625 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g44712 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G103078 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G440349 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Glyma.11G061600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G024900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os03g62690 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_81514g0010 No alias (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Seita.2G400300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen03g029160 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g004700 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
CC GO:0000814 ESCRT II complex IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 95 141
IPR002885 Pentatricopeptide_repeat 1 26
IPR002885 Pentatricopeptide_repeat 171 197
No external refs found!