Description : Ribosomal L38e protein family
Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Selaginella: 270247 | |
Cluster | HCCA clusters: Cluster_54 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_59471 | No alias | 60s ribosomal protein l38 | 0.04 | Orthogroups_2024-Update | |
AC190609.3_FG002 | No alias | Ribosomal L38e protein family | 0.02 | Orthogroups_2024-Update | |
At2g43460 | No alias | 60S ribosomal protein L38... | 0.03 | Orthogroups_2024-Update | |
At3g59540 | No alias | 60S ribosomal protein L38... | 0.06 | Orthogroups_2024-Update | |
Bradi1g25302 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
Bradi3g41837 | No alias | Ribosomal L38e protein family | 0.05 | Orthogroups_2024-Update | |
Brara.C02203.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Brara.E00357.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Brara.I04090.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Cre07.g325746 | No alias | Ribosomal L38e protein family | 0.18 | Orthogroups_2024-Update | |
Glyma.08G100000 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
HORVU2Hr1G043220.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Kfl00433_0040 | kfl00433_0040_v1.1 | (at3g59540 : 122.0) Ribosomal L38e protein family;... | 0.06 | Orthogroups_2024-Update | |
MA_20588g0010 | No alias | (at3g59540 : 129.0) Ribosomal L38e protein family;... | 0.1 | Orthogroups_2024-Update | |
Mp7g14520.1 | No alias | component RPL38 of LSU proteome component | 0.04 | Orthogroups_2024-Update | |
PSME_00035421-RA | No alias | (at3g59540 : 127.0) Ribosomal L38e protein family;... | 0.13 | Orthogroups_2024-Update | |
Potri.007G131800 | No alias | Ribosomal L38e protein family | 0.04 | Orthogroups_2024-Update | |
Potri.010G181200 | No alias | Ribosomal L38e protein family | 0.05 | Orthogroups_2024-Update | |
Pp1s227_122V6 | No alias | 60s ribosomal protein l38 | 0.14 | Orthogroups_2024-Update | |
Pp1s288_10V6 | No alias | 60s ribosomal protein l38 | 0.14 | Orthogroups_2024-Update | |
Pp1s67_172V6 | No alias | 60s ribosomal protein l38 | 0.05 | Orthogroups_2024-Update | |
Seita.2G274700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Seita.2G333600.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Seita.2G344700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Seita.6G231700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
Sobic.002G331300.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.007G184600.2 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
Solyc05g055640 | No alias | ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1) | 0.06 | Orthogroups_2024-Update | |
Solyc11g008510 | No alias | 60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC) | 0.11 | Orthogroups_2024-Update | |
Sopen05g034080 | No alias | Ribosomal L38e protein family | 0.02 | Orthogroups_2024-Update | |
Sopen11g004300 | No alias | Ribosomal L38e protein family | 0.06 | Orthogroups_2024-Update | |
evm.model.tig00021719.6 | No alias | (at3g59540 : 110.0) Ribosomal L38e protein family;... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000041 | transition metal ion transport | IEP | Predicted GO |
MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003712 | transcription coregulator activity | IEP | Predicted GO |
MF | GO:0003714 | transcription corepressor activity | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
CC | GO:0005758 | mitochondrial intermembrane space | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006825 | copper ion transport | IEP | Predicted GO |
MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Predicted GO |
MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Predicted GO |
CC | GO:0016469 | proton-transporting two-sector ATPase complex | IEP | Predicted GO |
CC | GO:0016471 | vacuolar proton-transporting V-type ATPase complex | IEP | Predicted GO |
MF | GO:0016530 | metallochaperone activity | IEP | Predicted GO |
MF | GO:0016531 | copper chaperone activity | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
CC | GO:0031090 | organelle membrane | IEP | Predicted GO |
CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
CC | GO:0031970 | organelle envelope lumen | IEP | Predicted GO |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
CC | GO:0033176 | proton-transporting V-type ATPase complex | IEP | Predicted GO |
MF | GO:0033218 | amide binding | IEP | Predicted GO |
CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
CC | GO:0044437 | vacuolar part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
MF | GO:0140104 | molecular carrier activity | IEP | Predicted GO |
MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002675 | Ribosomal_L38e | 2 | 68 |
No external refs found! |