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  4. Sequence
  5. 402120

402120


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 402120
Cluster HCCA clusters: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
At1g02370 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.02 Orthogroups_2024-Update
At1g15480 No alias Pentatricopeptide repeat-containing protein At1g15480,... 0.02 Orthogroups_2024-Update
At1g80270 No alias PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6] 0.03 Orthogroups_2024-Update
At2g20710 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Orthogroups_2024-Update
At4g01990 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.04 Orthogroups_2024-Update
At5g09450 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.03 Orthogroups_2024-Update
Bradi1g49750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
Bradi2g11510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g17360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00312.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.C02834.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02579.1 No alias RNA editing factor *(POCO) 0.06 Orthogroups_2024-Update
Brara.F01064.1 No alias RNA editing factor *(POCO) 0.06 Orthogroups_2024-Update
Brara.G02029.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
GRMZM2G135940 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G160994 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Glyma.06G099100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G119200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.08G176700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G283500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G129900 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
HORVU2Hr1G120330.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G011310.1 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g40750 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_29806g0010 No alias (at1g60770 : 282.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_492314g0010 No alias (at1g80270 : 290.0) PENTATRICOPEPTIDE REPEAT 596... 0.03 Orthogroups_2024-Update
Potri.011G051500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G132700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G133000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G050300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G036100 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Potri.016G063400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G079600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Seita.2G083900.1 No alias RNA editing factor *(POCO) 0.05 Orthogroups_2024-Update
Seita.4G018800.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.5G027300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G203600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G078100.1 No alias RNA editing factor *(POCO) 0.03 Orthogroups_2024-Update
Sobic.003G144000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G166000.1 No alias splicing factor *(CRR16) 0.02 Orthogroups_2024-Update
Sobic.008G113200.2 No alias splicing factor *(RTP7) 0.02 Orthogroups_2024-Update
Sobic.010G018900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g089870 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc06g005140 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g006380 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g035710 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g031410 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g002280 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen12g010730 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 346 365
IPR002885 Pentatricopeptide_repeat 199 227
No external refs found!