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  5. 411118

411118


Description : casein lytic proteinase B3


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 411118
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G090440.2 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
HORVU5Hr1G031470.8 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g31300 No alias chaperone protein clpB 1, putative, expressed 0.02 Orthogroups_2024-Update
MA_8117g0010 No alias (at5g50920 : 620.0) Encodes a protein that is similar to... 0.03 Orthogroups_2024-Update
Potri.017G090600 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
Pp1s23_102V6 No alias atpase aaa-2 domain protein 0.02 Orthogroups_2024-Update
Pp1s300_55V6 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Seita.7G079400.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
evm.model.tig00000655.28 No alias (at5g50920 : 1134.0) Encodes a protein that is similar... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR004176 Clp_N 283 327
IPR004176 Clp_N 199 250
IPR019489 Clp_ATPase_C 957 1036
IPR003959 ATPase_AAA_core 782 950
IPR003959 ATPase_AAA_core 386 501
IPR000467 G_patch_dom 38 81
No external refs found!