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  4. Sequence
  5. 41818

41818


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 41818
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.02 Orthogroups_2024-Update
At1g03510 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At2g03380 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.02 Orthogroups_2024-Update
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os08g04400 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
Potri.002G155100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G109300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s13_264V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.3G267700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G044700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g010510 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0010024 phytochromobilin biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
MF GO:0050897 cobalt ion binding IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0051202 phytochromobilin metabolic process IEP Predicted GO
CC GO:0061617 MICOS complex IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 512 533
IPR002885 Pentatricopeptide_repeat 409 431
IPR002885 Pentatricopeptide_repeat 234 264
IPR002885 Pentatricopeptide_repeat 334 374
IPR002885 Pentatricopeptide_repeat 28 75
IPR002885 Pentatricopeptide_repeat 437 481
IPR002885 Pentatricopeptide_repeat 131 179
No external refs found!