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  5. 441332

441332


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 441332
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
MA_4589g0010 No alias (at3g22470 : 368.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_68479g0010 No alias (at1g62910 : 405.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.04 Orthogroups_2024-Update
MA_854602g0010 No alias (at1g63080 : 271.0) Transacting siRNA generating locus.... 0.06 Orthogroups_2024-Update
MA_89072g0010 No alias (at3g22470 : 320.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_959553g0010 No alias (at3g22470 : 392.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00012029-RA No alias (at5g41170 : 136.0) Pentatricopeptide repeat (PPR-like)... 0.04 Orthogroups_2024-Update
PSME_00029699-RA No alias (at3g22470 : 363.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00048186-RA No alias (at3g22470 : 359.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 169 200
IPR002885 Pentatricopeptide_repeat 104 152
IPR002885 Pentatricopeptide_repeat 206 255
IPR002885 Pentatricopeptide_repeat 346 390
IPR002885 Pentatricopeptide_repeat 416 465
IPR002885 Pentatricopeptide_repeat 276 325
No external refs found!