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  4. Sequence
  5. 444767

444767


Description : ribosomal protein L16B


Gene families : OG_42_0001107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 444767
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Bradi2g32640 No alias ribosomal protein large subunit 16A 0.03 Orthogroups_2024-Update
Bradi3g09030 No alias ribosomal protein large subunit 16A 0.03 Orthogroups_2024-Update
Brara.A00981.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Brara.F03663.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.I01908.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.K00428.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre01.g027000 No alias ribosomal protein large subunit 16A 0.02 Orthogroups_2024-Update
GRMZM2G014444 No alias Ribosomal L5P family protein 0.03 Orthogroups_2024-Update
Glyma.06G317400 No alias Ribosomal L5P family protein 0.02 Orthogroups_2024-Update
Glyma.06G323000 No alias Ribosomal L5P family protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G028820.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
HORVU3Hr1G026060.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Mp2g24740.1 No alias component RPL11 of LSU proteome component 0.02 Orthogroups_2024-Update
Potri.006G181600 No alias Ribosomal L5P family protein 0.02 Orthogroups_2024-Update
Pp1s41_304V6 No alias 60s ribosomal protein 0.02 Orthogroups_2024-Update
Seita.5G144900.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.7G232800.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.003G025200.2 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G103800.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G104100.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.004G104300.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc02g086240 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.04 Orthogroups_2024-Update
Solyc07g055230 No alias homeodomain GLABROUS 7 (AHRD V3.3 --* AT5G52170.3) 0.02 Orthogroups_2024-Update
Solyc10g007980 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.03 Orthogroups_2024-Update
Solyc12g010930 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.02 Orthogroups_2024-Update
Sopen02g030920 No alias ribosomal L5P family C-terminus 0.03 Orthogroups_2024-Update
Sopen10g003850 No alias ribosomal L5P family C-terminus 0.03 Orthogroups_2024-Update
Sopen12g006290 No alias ribosomal L5P family C-terminus 0.03 Orthogroups_2024-Update
evm.model.contig_4456.22 No alias (p46287|rl11_medsa : 230.0) 60S ribosomal protein L11... 0.03 Orthogroups_2024-Update
evm.model.tig00020610.38 No alias (at2g42740 : 221.0) encodes a cytosolic ribosomal... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006189 'de novo' IMP biosynthetic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 6 59
IPR031309 Ribosomal_L5_C 63 161
No external refs found!