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  5. 45667

45667


Description : zinc finger nuclease 3


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 45667
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
A4A49_10593 No alias zinc finger ccch domain-containing protein zfn-like protein 0.02 Orthogroups_2024-Update
At1g04990 No alias Zinc finger CCCH domain-containing protein 3... 0.02 Orthogroups_2024-Update
Bradi2g09340 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Bradi4g39137 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Brara.A03862.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
Brara.C01681.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Brara.C03152.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
Brara.E03281.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
Glyma.15G095500 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Pp1s6_315V6 No alias nucleic acid binding 0.03 Orthogroups_2024-Update
Sobic.008G092300.3 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
Sopen11g004680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 56 81
IPR000571 Znf_CCCH 11 36
IPR000571 Znf_CCCH 252 275
IPR000571 Znf_CCCH 102 127
IPR000571 Znf_CCCH 205 230
No external refs found!