Sopen01g031470

Description : SNF2 family N-terminal domain

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g031470
Cluster	HCCA clusters: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
A4A49_27543	No alias	putative atp-dependent dna helicase chr12	0.03	Orthogroups_2024-Update
Bradi1g26940	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
Brara.E00474.1	No alias	chromatin remodeling factor *(ALC1)	0.02	Orthogroups_2024-Update
Cre03.g179300	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
Cre07.g325700	No alias	transcription regulatory protein SNF2, putative	0.02	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
Glyma.15G097000	No alias	chromatin remodeling factor17	0.02	Orthogroups_2024-Update
HORVU1Hr1G021540.17	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	Orthogroups_2024-Update
PSME_00006567-RA	No alias	(at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);...	0.02	Orthogroups_2024-Update
Pp1s136_72V6	No alias	swi snf matrix actin dependent regulator of subfamily member 1	0.02	Orthogroups_2024-Update
Solyc02g068560	No alias	CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3...	0.02	Orthogroups_2024-Update
evm.model.tig00000217.24	No alias	(at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in...	0.01	Orthogroups_2024-Update
evm.model.tig00020960.24	No alias	(at2g13370 : 202.0) chromatin remodeling 5 (CHR5);...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042393	histone binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	437	712
IPR029295	SnAC	924	1000
IPR001650	Helicase_C	731	844

External Links

No external refs found!