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  4. Sequence
  5. 73641

73641


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 73641
Cluster HCCA clusters: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
102435 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
126194 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
47998 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
93575 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_36693 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_39625 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.03 Orthogroups_2024-Update
At1g25360 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Orthogroups_2024-Update
At5g13230 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.01 Orthogroups_2024-Update
LOC_Os01g60250 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g13230 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g49920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g02200 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
MA_34492g0020 No alias (at3g03580 : 414.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_525914g0010 No alias (at1g11290 : 644.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_653417g0010 No alias (at4g13650 : 731.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_7907g0020 No alias (at3g57430 : 717.0) Encodes a chloroplast RNA editing... 0.06 Orthogroups_2024-Update
MA_81514g0010 No alias (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00001463-RA No alias (at4g33170 : 587.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00004828-RA No alias (at4g13650 : 573.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00011210-RA No alias (at1g15510 : 705.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00024152-RA No alias (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00026226-RA No alias (at3g46790 : 588.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
Sobic.002G403500.3 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 295 345
IPR002885 Pentatricopeptide_repeat 21 67
IPR002885 Pentatricopeptide_repeat 195 241
IPR002885 Pentatricopeptide_repeat 2 20
IPR002885 Pentatricopeptide_repeat 99 125
IPR002885 Pentatricopeptide_repeat 127 152
IPR002885 Pentatricopeptide_repeat 372 396
No external refs found!