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  5. 81392

81392


Description : glycine-rich RNA-binding protein 3


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 81392
Cluster HCCA clusters: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
406315 No alias glycine-rich RNA-binding protein 4 0.02 Orthogroups_2024-Update
A4A49_14417 No alias glycine-rich rna-binding protein 7 0.02 Orthogroups_2024-Update
A4A49_21370 No alias glycine-rich rna-binding protein 2, mitochondrial 0.02 Orthogroups_2024-Update
At1g60650 No alias Glycine-rich RNA-binding protein RZ1B... 0.02 Orthogroups_2024-Update
At1g74230 No alias Glycine-rich RNA-binding protein 5, mitochondrial... 0.02 Orthogroups_2024-Update
At2g21660 No alias Glycine-rich RNA-binding protein 7... 0.02 Orthogroups_2024-Update
At3g23830 No alias GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35] 0.04 Orthogroups_2024-Update
At3g26420 No alias Glycine-rich RNA-binding protein RZ1A... 0.04 Orthogroups_2024-Update
At4g13850 No alias Glycine-rich RNA-binding protein 2, mitochondrial... 0.02 Orthogroups_2024-Update
Bradi1g02570 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Bradi1g12460 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 Orthogroups_2024-Update
Bradi1g12787 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Bradi2g58690 No alias glycine-rich RNA-binding protein 4 0.02 Orthogroups_2024-Update
Bradi3g14640 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Bradi4g00940 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Bradi4g06840 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
Brara.B03236.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C04224.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Brara.E01401.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Brara.H00482.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Brara.I00645.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.05 Orthogroups_2024-Update
GRMZM2G042118 No alias glycine-rich RNA-binding protein 2 0.02 Orthogroups_2024-Update
GRMZM2G077797 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
GRMZM2G113513 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
GRMZM2G131167 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
GRMZM2G165901 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
Glyma.03G172300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.04G012700 No alias cold, circadian rhythm, and rna binding 2 0.02 Orthogroups_2024-Update
Glyma.05G020900 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
Glyma.06G263200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.11G117600 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.11G255000 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Glyma.17G078400 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.18G266500 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.19G173200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G094330.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
HORVU7Hr1G073220.1 No alias RNA editing factor *(ORRM2) 0.04 Orthogroups_2024-Update
Kfl00609_0010 kfl00609_0010_v1.... (p49310|grp1_sinal : 126.0) Glycine-rich RNA-binding... 0.02 Orthogroups_2024-Update
LOC_Os01g68790 No alias RNA recognition motif containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g08960 No alias RNA recognition motif containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g36490 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g43600 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
MA_77292g0010 No alias (at5g54580 : 113.0) RNA-binding (RRM/RBD/RNP motifs)... 0.06 Orthogroups_2024-Update
PSME_00047208-RA No alias (at5g61030 : 152.0) encodes a glycine-rich RNA binding... 0.04 Orthogroups_2024-Update
Potri.001G319800 No alias glycine-rich RNA-binding protein 2 0.07 Orthogroups_2024-Update
Potri.001G319900 No alias glycine-rich RNA-binding protein 2 0.04 Orthogroups_2024-Update
Potri.001G409800 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Potri.017G059000 No alias glycine-rich RNA-binding protein 2 0.04 Orthogroups_2024-Update
Pp1s128_53V6 No alias rna recognition motif family expressed 0.02 Orthogroups_2024-Update
Pp1s42_251V6 No alias glycine-rich rna-binding protein 2 0.02 Orthogroups_2024-Update
Seita.2G381300.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Seita.3G357800.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
Seita.6G068900.1 No alias RNA editing factor *(ORRM2) 0.03 Orthogroups_2024-Update
Sobic.001G141300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G366800.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Sobic.003G401400.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Sobic.007G034400.1 No alias RNA editing factor *(ORRM2) 0.03 Orthogroups_2024-Update
Sobic.008G103900.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Sobic.008G185900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g088790 No alias RNA-binding protein (AHRD V3.3 *** Q941H9_TOBAC) 0.02 Orthogroups_2024-Update
Solyc05g053780 No alias RNA binding protein-like protein (AHRD V3.3 *** Q3HVL3_SOLTU) 0.02 Orthogroups_2024-Update
Solyc10g081180 No alias RNA-binding protein (AHRD V3.3 *-* Q941H9_TOBAC) 0.04 Orthogroups_2024-Update
Sopen02g016120 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen05g032250 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen10g031680 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 39 109
No external refs found!