- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pectin lyase-like superfamily protein
Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 81909 | |
| Cluster | HCCA clusters: Cluster_219 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_16446 | No alias | putative pectate lyase 13 | 0.03 | Orthogroups_2024-Update | |
| Brara.B01305.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.02 | Orthogroups_2024-Update | |
| Brara.C00647.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.02 | Orthogroups_2024-Update | |
| Brara.G02735.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.02 | Orthogroups_2024-Update | |
| Brara.H03034.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Brara.I03611.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Glyma.06G174700 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G075970.2 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.02 | Orthogroups_2024-Update | |
| LOC_Os04g05050 | No alias | pectate lyase precursor, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_10433252g0010 | No alias | (at3g24670 : 194.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| Mp3g01000.1 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
| PSME_00017513-RA | No alias | (at4g24780 : 555.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| Pp1s67_160V6 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
| Seita.4G230900.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.02 | Orthogroups_2024-Update | |
| Solyc03g058890 | No alias | Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) | 0.02 | Orthogroups_2024-Update | |
| Solyc09g008380 | No alias | Pectate lyase (AHRD V3.3 *** K4CQM6_SOLLC) | 0.02 | Orthogroups_2024-Update | |
| Sopen06g034960 | No alias | Pectate lyase | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
| CC | GO:0009523 | photosystem II | IEP | Predicted GO |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
| MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 85 | 267 |
| No external refs found! |