Sopen01g033820

Description : Core histone H2A/H2B/H3/H4

Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g033820
Cluster	HCCA clusters: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g45500	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G179005	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
HORVU7Hr1G033030.1	No alias	histone *(H3)	0.02	Orthogroups_2024-Update
Potri.001G016900	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Solyc01g073970	No alias	Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	30	90

External Links

No external refs found!