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  4. Sequence
  5. 89230

89230


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 89230
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G030148 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G102000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00005439-RA No alias (at2g03880 : 518.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00018598-RA No alias (at1g11290 : 726.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00052053-RA No alias (at1g11290 : 599.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Seita.2G203300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G295700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 119 166
IPR002885 Pentatricopeptide_repeat 326 342
IPR002885 Pentatricopeptide_repeat 397 421
IPR002885 Pentatricopeptide_repeat 195 221
IPR002885 Pentatricopeptide_repeat 223 252
IPR002885 Pentatricopeptide_repeat 92 115
IPR002885 Pentatricopeptide_repeat 298 321
IPR032867 DYW_dom 497 621
No external refs found!