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  5. 93439

93439


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 93439
Cluster HCCA clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
A4A49_32855 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
Brara.A03228.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Glyma.03G108500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G058070.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G051030.9 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
MA_136326g0010 No alias (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_79738g0010 No alias (at3g13770 : 512.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Seita.9G489500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen11g017250 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006481 C-terminal protein methylation IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
BP GO:0018410 C-terminal protein amino acid modification IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043687 post-translational protein modification IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 193 222
IPR002885 Pentatricopeptide_repeat 165 191
IPR002885 Pentatricopeptide_repeat 65 86
IPR002885 Pentatricopeptide_repeat 867 894
IPR002885 Pentatricopeptide_repeat 267 293
IPR002885 Pentatricopeptide_repeat 296 342
IPR002885 Pentatricopeptide_repeat 493 539
IPR002885 Pentatricopeptide_repeat 394 438
IPR002885 Pentatricopeptide_repeat 589 635
IPR002885 Pentatricopeptide_repeat 792 839
IPR002885 Pentatricopeptide_repeat 689 735
IPR002885 Pentatricopeptide_repeat 90 138
IPR032867 DYW_dom 969 1086
No external refs found!