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  5. 98330

98330


Description : topoisomerase II


Gene families : OG_42_0003889 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003889_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 98330
Cluster HCCA clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
A4A49_12016 No alias dna topoisomerase 2 0.03 Orthogroups_2024-Update
At3g23890 No alias DNA topoisomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:P30182] 0.04 Orthogroups_2024-Update
Brara.A00830.1 No alias DNA topoisomerase *(TOP2) 0.04 Orthogroups_2024-Update
Cre01.g009250 No alias topoisomerase II 0.02 Orthogroups_2024-Update
Glyma.10G090000 No alias topoisomerase II 0.05 Orthogroups_2024-Update
Glyma.15G276000 No alias topoisomerase II 0.05 Orthogroups_2024-Update
Kfl00053_0310 kfl00053_0310_v1.1 (o24308|top2_pea : 1259.0) DNA topoisomerase 2 (EC... 0.04 Orthogroups_2024-Update
MA_133272g0010 No alias (at3g23890 : 1518.0) Encodes a topoisomerase II that is... 0.03 Orthogroups_2024-Update
MA_6634g0010 No alias (o24308|top2_pea : 1595.0) DNA topoisomerase 2 (EC... 0.04 Orthogroups_2024-Update
Mp3g13420.1 No alias DNA topoisomerase (TOP2) 0.03 Orthogroups_2024-Update
PSME_00008874-RA No alias (at3g23890 : 1554.0) Encodes a topoisomerase II that is... 0.04 Orthogroups_2024-Update
PSME_00016559-RA No alias (o24308|top2_pea : 1626.0) DNA topoisomerase 2 (EC... 0.06 Orthogroups_2024-Update
Pp1s33_203V6 No alias dna topoisomerase ii 0.03 Orthogroups_2024-Update
Solyc01g087500 No alias DNA topoisomerase 2 (AHRD V3.3 *** K4AYE0_SOLLC) 0.04 Orthogroups_2024-Update
Sopen01g034420 No alias DNA gyrase/topoisomerase IV, subunit A 0.04 Orthogroups_2024-Update
evm.model.contig_3477.2 No alias (at3g23890 : 1176.0) Encodes a topoisomerase II that is... 0.03 Orthogroups_2024-Update
evm.model.tig00021432.55 No alias (o24308|top2_pea : 775.0) DNA topoisomerase 2 (EC... 0.03 Orthogroups_2024-Update
evm.model.tig00021433.1 No alias (at3g23890 : 211.0) Encodes a topoisomerase II that is... 0.06 Orthogroups_2024-Update
evm.model.tig00021433.2 No alias (at3g23890 : 475.0) Encodes a topoisomerase II that is... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006265 DNA topological change IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR013506 Topo_IIA_bsu_dom2 253 409
IPR031660 TOPRIM_C 554 681
IPR006171 TOPRIM_domain 440 538
IPR002205 Topo_IIA_A/C 684 1143
IPR003594 HATPase_C 61 208
No external refs found!