1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen01g039430

Sopen01g039430


Description : PPR repeat family


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g039430
Cluster HCCA clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
51483 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
74627 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_25971 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g31920 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.02 Orthogroups_2024-Update
At3g13880 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.02 Orthogroups_2024-Update
At5g66520 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Orthogroups_2024-Update
Bradi1g56040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g54927 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.A02436.1 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
Brara.E01751.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F01301.1 No alias RNA editing factor *(OTP970) 0.03 Orthogroups_2024-Update
Brara.G01254.1 No alias RNA editing factor *(CREF7) 0.02 Orthogroups_2024-Update
Brara.H01750.1 No alias RNA editing factor *(SLO4) 0.02 Orthogroups_2024-Update
Cre06.g298300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G143377 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G175253 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G048100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G173200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G234100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G057900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G068600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G208902 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G286100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G119700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G023070.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
HORVU3Hr1G023090.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
HORVU4Hr1G014730.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G113990.21 No alias RNA editing factor *(CRR28) 0.03 Orthogroups_2024-Update
LOC_Os01g10800 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g38310 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_100519g0010 No alias (at2g27610 : 631.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_10214098g0010 No alias (at4g33170 : 616.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_10433543g0010 No alias (at4g13650 : 679.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_174226g0010 No alias (at4g13650 : 687.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_20746g0010 No alias (at1g11290 : 522.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_27147g0010 No alias (at3g49170 : 606.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
MA_27726g0010 No alias (at1g15510 : 744.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
MA_381817g0020 No alias (at2g22070 : 544.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_465411g0010 No alias (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00025402-RA No alias (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
PSME_00056680-RA No alias (at2g22070 : 511.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.001G135400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G138000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Pp1s103_35V6 No alias MZB10.7; pentatricopeptide (PPR) repeat-containing... 0.01 Orthogroups_2024-Update
Pp1s178_15V6 No alias T1B8.1; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.1G272500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G068700.1 No alias RNA editing factor *(CRR28) 0.03 Orthogroups_2024-Update
Seita.9G375400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G272600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G047100.1 No alias RNA editing factor *(REME2/PGL1) 0.02 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc08g076150 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen08g024790 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 798 919
IPR002885 Pentatricopeptide_repeat 624 668
IPR002885 Pentatricopeptide_repeat 451 498
IPR002885 Pentatricopeptide_repeat 318 360
IPR002885 Pentatricopeptide_repeat 520 568
IPR002885 Pentatricopeptide_repeat 696 721
IPR002885 Pentatricopeptide_repeat 596 620
No external refs found!