Sopen01g042420

Description : tRNA synthetase class II core domain (G, H, P, S and T)

Gene families : OG_42_0003118 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003118_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g042420
Cluster	HCCA clusters: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
99251	No alias	seryl-tRNA synthetase / serine--tRNA ligase	0.05	Orthogroups_2024-Update
Bradi2g08900	No alias	seryl-tRNA synthetase / serine--tRNA ligase	0.02	Orthogroups_2024-Update
Brara.B03543.1	No alias	serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond	0.23	Orthogroups_2024-Update
Cre03.g189400	No alias	seryl-tRNA synthetase / serine--tRNA ligase	0.01	Orthogroups_2024-Update
GRMZM2G172101	No alias	seryl-tRNA synthetase / serine--tRNA ligase	0.02	Orthogroups_2024-Update
Glyma.10G155000	No alias	seryl-tRNA synthetase / serine--tRNA ligase	0.05	Orthogroups_2024-Update
Glyma.20G233300	No alias	seryl-tRNA synthetase / serine--tRNA ligase	0.07	Orthogroups_2024-Update
HORVU4Hr1G070630.2	No alias	serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond	0.17	Orthogroups_2024-Update
HORVU6Hr1G080800.2	No alias	serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond	0.11	Orthogroups_2024-Update
Mp8g15990.1	No alias	serine-tRNA ligase	0.02	Orthogroups_2024-Update
Potri.005G094400	No alias	seryl-tRNA synthetase / serine--tRNA ligase	0.02	Orthogroups_2024-Update
Seita.9G503900.1	No alias	serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond	0.08	Orthogroups_2024-Update
Sobic.001G468600.1	No alias	serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond	0.02	Orthogroups_2024-Update
Solyc01g098880	No alias	Seryl-tRNA synthetase, putative (AHRD V3.3 *** B9RKX9_RICCO)	0.19	Orthogroups_2024-Update
evm.model.contig_2110.1	No alias	(at5g27470 : 511.0) seryl-tRNA synthetase / serine--tRNA...	0.02	Orthogroups_2024-Update
evm.model.tig00020610.57	No alias	(o81983\|sys_helan : 467.0) Seryl-tRNA synthetase (EC...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	InterProScan predictions
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002314	aa-tRNA-synt_IIb	221	408
IPR015866	Ser-tRNA-synth_1_N	1	112

External Links

No external refs found!

Sopen01g042420

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation