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  5. Sopen01g044290

Sopen01g044290


Description : PPR repeat


Gene families : OG_42_0010683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010683_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g044290
Cluster HCCA clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
Bradi1g64170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G392100.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 438 484
IPR002885 Pentatricopeptide_repeat 336 383
IPR002885 Pentatricopeptide_repeat 204 252
IPR032867 DYW_dom 611 735
IPR002885 Pentatricopeptide_repeat 45 74
IPR002885 Pentatricopeptide_repeat 513 536
IPR002885 Pentatricopeptide_repeat 117 138
IPR002885 Pentatricopeptide_repeat 145 174
IPR002885 Pentatricopeptide_repeat 305 333
No external refs found!