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  5. Sopen01g045490

Sopen01g045490


Description : rRNA-processing arch domain


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g045490
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
79650 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
Bradi1g52230 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Orthogroups_2024-Update
Bradi4g24170 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Brara.I01587.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 Orthogroups_2024-Update
Cre06.g289950 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G028060.16 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 Orthogroups_2024-Update
HORVU6Hr1G025670.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.02 Orthogroups_2024-Update
PSME_00006076-RA No alias (at1g59760 : 1096.0) RNA helicase, ATP-dependent,... 0.02 Orthogroups_2024-Update
Potri.004G228700 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Pp1s58_31V6 No alias superkiller viralicidic activity 2-like 2 0.03 Orthogroups_2024-Update
Seita.4G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 Orthogroups_2024-Update
Sobic.004G048800.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.02 Orthogroups_2024-Update
Sobic.010G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 Orthogroups_2024-Update
Solyc01g103080 No alias ATP-dependent RNA helicase family protein (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc05g047520 No alias ATP-dependent RNA helicase DOB1 (AHRD V3.3 *** A0A0K9PZL4_ZOSMR) 0.03 Orthogroups_2024-Update
evm.model.tig00020723.108 No alias (at1g59760 : 938.0) RNA helicase, ATP-dependent,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012961 Ski2_C 817 986
IPR011545 DEAD/DEAH_box_helicase_dom 73 220
IPR025696 rRNA_proc-arch_dom 519 790
No external refs found!