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  5. Sopen01g045900

Sopen01g045900


Description : SRF-type transcription factor (DNA-binding and dimerisation domain)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g045900
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
A4A49_35435 No alias agamous-like mads-box protein agl8 0.03 Orthogroups_2024-Update
At5g62165 No alias MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1] 0.02 Orthogroups_2024-Update
Bradi2g31084 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi5g21700 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.B01837.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.G01735.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.H01578.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.J01588.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
Glyma.02G185500 No alias AGAMOUS-like 18 0.03 Orthogroups_2024-Update
Glyma.03G019300 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.06G117600 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.08G310100 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.09G266400 No alias AGAMOUS-like 6 0.02 Orthogroups_2024-Update
Glyma.09G283800 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.10G084700 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Glyma.10G085600 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Glyma.17G081200 No alias AGAMOUS-like 8 0.04 Orthogroups_2024-Update
LOC_Os01g10504 No alias OsMADS3 - MADS-box family gene with MIKCc type-box, expressed 0.04 Orthogroups_2024-Update
LOC_Os02g07430 No alias OsMADS29 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Potri.001G284600 No alias AGAMOUS-like 17 0.03 Orthogroups_2024-Update
Potri.002G151700 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Potri.007G087500 No alias AGAMOUS-like 66 0.03 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.02 Orthogroups_2024-Update
Seita.4G160200.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G314400.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.002G258000.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Sobic.010G029200.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Solyc02g071730 No alias Tomato AGAMOUS 1 0.03 Orthogroups_2024-Update
Solyc02g089210 No alias MADS box transcription factor (AHRD V3.3 *** Q689E7_GENTR) 0.02 Orthogroups_2024-Update
Solyc10g017630 No alias MADS-box transcription factor (AHRD V3.3 *** Q1EMR8_PLAMJ) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 11 51
No external refs found!