Sopen01g053690

Description : Skp1 family, dimerisation domain

Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g053690
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
At3g60020	No alias	SK5 [Source:UniProtKB/TrEMBL;Acc:A0A178VPE2]	0.03	Orthogroups_2024-Update
At4g34210	No alias	SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]	0.03	Orthogroups_2024-Update
PSME_00046645-RA	No alias	(at5g42190 : 166.0) Similar to SKP1 in yeast and humans...	0.02	Orthogroups_2024-Update
Sobic.005G111100.1	No alias	ASK-type linker component of SCF E3 ubiquitin ligase complexes	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	InterProScan predictions
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR016072	Skp1_comp_dimer	107	154
IPR016073	Skp1_comp_POZ	6	64

External Links

No external refs found!