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  5. Solyc01g110020

Solyc01g110020


Description : PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (AHRD V3.3 *** AT4G39100.1)


Gene families : OG_42_0001066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001066_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc01g110020
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
PSME_00050748-RA No alias (at4g22140 : 212.0) EARLY BOLTING IN SHORT DAYS (EBS);... 0.01 Orthogroups_2024-Update
Sobic.002G058300.3 No alias component *(SHL/EBS) of PRC1 complex 0.01 Orthogroups_2024-Update
Sopen01g052210 No alias BAH domain 0.04 Orthogroups_2024-Update
evm.model.tig00020684.28 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predicted GO
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predicted GO
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004532 exoribonuclease activity IEP Predicted GO
MF GO:0004535 poly(A)-specific ribonuclease activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
CC GO:0005795 Golgi stack IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0007033 vacuole organization IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
CC GO:0031984 organelle subcompartment IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098791 Golgi subcompartment IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1905037 autophagosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001025 BAH_dom 22 136
No external refs found!