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  5. Sopen02g011220

Sopen02g011220


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0001424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g011220
Cluster HCCA clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Sopen10g021240 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g005050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029472 Copia-like_N 35 75
IPR013103 RVT_2 540 627
No external refs found!