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  5. Sopen02g013810

Sopen02g013810


Description : SNF2 family N-terminal domain


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g013810
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
At4g31900 No alias CHD3-type chromatin-remodeling factor CHR7... 0.02 Orthogroups_2024-Update
At5g18620 No alias Chromatin-remodeling complex ATPase... 0.02 Orthogroups_2024-Update
At5g66750 No alias ATP-dependent DNA helicase DDM1... 0.02 Orthogroups_2024-Update
Brara.A03677.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Glyma.06G063400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Kfl00030_0270 kfl00030_0270_v1.1 (at5g66750 : 640.0) Protein is similar to SWI2/SNF2... 0.02 Orthogroups_2024-Update
LOC_Os05g05780 No alias chromatin-remodeling complex ATPase chain, putative, expressed 0.02 Orthogroups_2024-Update
Potri.010G019800 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Pp1s338_32V6 No alias chromodomain helicase dna binding protein 3 0.02 Orthogroups_2024-Update
Sobic.002G021200.1 No alias chromatin remodeling factor *(DDM1) 0.04 Orthogroups_2024-Update
Solyc06g054560 No alias RNA helicase DEAH-box19 0.03 Orthogroups_2024-Update
Solyc08g029120 No alias No description available 0.04 Orthogroups_2024-Update
Sopen06g019630 No alias SNF2 family N-terminal domain 0.04 Orthogroups_2024-Update
evm.model.tig00000128.11 No alias (at5g18620 : 692.0) chromatin remodeling factor17... 0.01 Orthogroups_2024-Update
evm.model.tig00000217.24 No alias (at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
evm.model.tig00020825.19 No alias (at2g13370 : 429.0) chromatin remodeling 5 (CHR5);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000330 SNF2_N 218 508
IPR001650 Helicase_C 532 644
No external refs found!