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  5. Sopen02g019410

Sopen02g019410


Description : Ribosomal family S4e


Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g019410
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
148442 No alias Ribosomal protein S4 (RPS4A) family protein 0.21 Orthogroups_2024-Update
A4A49_10798 No alias 40s ribosomal protein s4 0.16 Orthogroups_2024-Update
A4A49_59874 No alias 40s ribosomal protein s4 0.11 Orthogroups_2024-Update
At2g17360 No alias 40S ribosomal protein S4-1... 0.04 Orthogroups_2024-Update
At5g07090 No alias 40S ribosomal protein S4-2... 0.09 Orthogroups_2024-Update
At5g58420 No alias 40S ribosomal protein S4-3... 0.07 Orthogroups_2024-Update
Bradi2g35620 No alias Ribosomal protein S4 (RPS4A) family protein 0.24 Orthogroups_2024-Update
Brara.B00233.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.35 Orthogroups_2024-Update
Brara.B01147.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Brara.C00278.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Brara.C01137.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Brara.J01227.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Brara.J02486.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Cre06.g308250 No alias Ribosomal protein S4 (RPS4A) family protein 0.14 Orthogroups_2024-Update
GRMZM2G035017 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Orthogroups_2024-Update
GRMZM2G125271 No alias Ribosomal protein S4 (RPS4A) family protein 0.11 Orthogroups_2024-Update
Glyma.01G124300 No alias Ribosomal protein S4 (RPS4A) family protein 0.08 Orthogroups_2024-Update
Glyma.02G263200 No alias Ribosomal protein S4 (RPS4A) family protein 0.15 Orthogroups_2024-Update
Glyma.03G050300 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Orthogroups_2024-Update
Glyma.14G056900 No alias Ribosomal protein S4 (RPS4A) family protein 0.23 Orthogroups_2024-Update
HORVU1Hr1G021720.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Kfl00456_0140 kfl00456_0140_v1.1 (p46299|rs4_goshi : 404.0) 40S ribosomal protein S4 -... 0.09 Orthogroups_2024-Update
LOC_Os05g30530 No alias 40S ribosomal protein S4, putative, expressed 0.03 Orthogroups_2024-Update
MA_127596g0010 No alias (at5g58420 : 436.0) Ribosomal protein S4 (RPS4A) family... 0.14 Orthogroups_2024-Update
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.12 Orthogroups_2024-Update
Mp8g03290.1 No alias component RPS4 of SSU proteome 0.03 Orthogroups_2024-Update
PSME_00000090-RA No alias (at5g58420 : 423.0) Ribosomal protein S4 (RPS4A) family... 0.07 Orthogroups_2024-Update
Potri.013G011000 No alias Ribosomal protein S4 (RPS4A) family protein 0.08 Orthogroups_2024-Update
Pp1s282_25V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s2_16V6 No alias 40s ribosomal protein s4 0.08 Orthogroups_2024-Update
Pp1s38_194V6 No alias 40s ribosomal s4 protein 0.22 Orthogroups_2024-Update
Pp1s39_422V6 No alias 40s ribosomal s4 protein 0.19 Orthogroups_2024-Update
Pp1s461_1V6 No alias 40s ribosomal protein s4 0.09 Orthogroups_2024-Update
Seita.3G036600.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.28 Orthogroups_2024-Update
Seita.3G268400.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Sobic.001G018900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.28 Orthogroups_2024-Update
Sobic.003G160900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.31 Orthogroups_2024-Update
Sobic.009G115700.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Solyc02g070320 No alias No description available 0.23 Orthogroups_2024-Update
Solyc02g070330 No alias 40S ribosomal protein S4 (AHRD V3.3 *-* RS4_SOLTU) 0.18 Orthogroups_2024-Update
Solyc02g070340 No alias 40S ribosomal protein S4 (AHRD V3.3 *** RS4_SOLTU) 0.07 Orthogroups_2024-Update
Solyc02g070350 No alias No description available 0.16 Orthogroups_2024-Update
Solyc02g070360 No alias No description available 0.38 Orthogroups_2024-Update
evm.model.contig_832.1 No alias (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... 0.37 Orthogroups_2024-Update
evm.model.tig00021433.38 No alias (p49398|rs4_orysa : 311.0) 40S ribosomal protein S4... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013843 Ribosomal_S4e_N 72 108
IPR002942 S4_RNA-bd 112 159
IPR013845 Ribosomal_S4e_central_region 164 238
IPR032277 40S_S4_C 281 327
IPR005824 KOW 246 279
No external refs found!