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  5. Sopen03g003230

Sopen03g003230


Description : Ion transport protein


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g003230
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G135651 No alias cyclic nucleotide-gated channel 17 0.03 Orthogroups_2024-Update
HORVU7Hr1G079400.3 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.04 Orthogroups_2024-Update
Sobic.001G155100.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
Solyc12g010010 No alias Cyclic nucleotide-gated ion channel, putative (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 422 512
IPR005821 Ion_trans_dom 12 329
No external refs found!