Solyc02g021400

Description : 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA)

Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc02g021400
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
170205	No alias	Nucleic acid-binding, OB-fold-like protein	0.04	Orthogroups_2024-Update
At3g10090	No alias	40S ribosomal protein S28-1...	0.03	Orthogroups_2024-Update
At5g03850	No alias	40S ribosomal protein S28-1...	0.07	Orthogroups_2024-Update
At5g64140	No alias	RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91]	0.05	Orthogroups_2024-Update
Bradi3g00500	No alias	Nucleic acid-binding, OB-fold-like protein	0.05	Orthogroups_2024-Update
Bradi4g13890	No alias	Nucleic acid-binding, OB-fold-like protein	0.05	Orthogroups_2024-Update
Bradi4g13910	No alias	Nucleic acid-binding, OB-fold-like protein	0.02	Orthogroups_2024-Update
Brara.C00134.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Brara.F02295.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Cre12.g510450	No alias	Nucleic acid-binding, OB-fold-like protein	0.1	Orthogroups_2024-Update
GRMZM2G124143	No alias	Nucleic acid-binding, OB-fold-like protein	0.06	Orthogroups_2024-Update
GRMZM2G455828	No alias	Nucleic acid-binding, OB-fold-like protein	0.08	Orthogroups_2024-Update
HORVU3Hr1G115820.3	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Kfl00237_0050	kfl00237_0050_v1.1	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
LOC_Os10g27174	No alias	40S ribosomal protein S28, putative, expressed	0.04	Orthogroups_2024-Update
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.06	Orthogroups_2024-Update
Potri.008G013200	No alias	ribosomal protein S28	0.08	Orthogroups_2024-Update
Potri.010G245400	No alias	ribosomal protein S28	0.02	Orthogroups_2024-Update
Potri.016G063100	No alias	ribosomal protein S28	0.07	Orthogroups_2024-Update
Pp1s21_362V6	No alias	40s ribosomal protein s28	0.15	Orthogroups_2024-Update
Pp1s279_27V6	No alias	40s ribosomal protein s28	0.11	Orthogroups_2024-Update
Pp1s313_15V6	No alias	40s ribosomal protein s28	0.08	Orthogroups_2024-Update
Pp1s34_107V6	No alias	40s ribosomal protein s28	0.1	Orthogroups_2024-Update
Sobic.001G402050.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Sobic.001G493001.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051246	regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	5	64

External Links

No external refs found!

Solyc02g021400

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation