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  5. Solyc02g030080

Solyc02g030080


Description : transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G11240.1)


Gene families : OG_42_0005652 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005652_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g030080
Cluster HCCA clusters: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
At5g11240 No alias At5g11240 [Source:UniProtKB/TrEMBL;Acc:B5X503] 0.05 Orthogroups_2024-Update
Bradi1g64927 No alias transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
Brara.J02245.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Cre12.g538500 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
GRMZM2G095043 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G054880.13 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G435300.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G401400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
evm.model.tig00000123.23 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 11 33
IPR001680 WD40_repeat 188 226
IPR007148 SSU_processome_Utp12 463 556
No external refs found!