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  5. Solyc01g009630

Solyc01g009630


Description : Cleavage and polyadenylation specificity factor subunit 5 (AHRD V3.3 *** A0A0K9P6H8_ZOSMR)


Gene families : OG_42_0002246 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g009630
Cluster HCCA clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Brara.A01548.1 No alias component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im) complex 0.03 Orthogroups_2024-Update
PSME_00040340-RA No alias (at4g25550 : 179.0) Cleavage/polyadenylation specificity... 0.03 Orthogroups_2024-Update
Seita.3G011000.1 No alias component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im) complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA InterProScan predictions
CC GO:0005849 mRNA cleavage factor complex IEA InterProScan predictions
BP GO:0006378 mRNA polyadenylation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
CC GO:0000922 spindle pole IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005815 microtubule organizing center IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007020 microtubule nucleation IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0052736 beta-glucanase activity IEP Predicted GO
MF GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR016706 Cleav_polyA_spec_factor_su5 7 192
No external refs found!