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  5. Sopen03g030940

Sopen03g030940


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0004215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g030940
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
At4g24770 No alias 31 kDa ribonucleoprotein, chloroplastic... 0.04 Orthogroups_2024-Update
Bradi3g42700 No alias 31-kDa RNA binding protein 0.08 Orthogroups_2024-Update
Brara.A01480.1 No alias plastidial ribonucleoprotein *(CP31) 0.08 Orthogroups_2024-Update
Brara.H01598.1 No alias plastidial ribonucleoprotein *(CP31) 0.08 Orthogroups_2024-Update
Glyma.17G125700 No alias 31-kDa RNA binding protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G058940.2 No alias plastidial ribonucleoprotein *(CP31) 0.06 Orthogroups_2024-Update
LOC_Os08g44290 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.012G090200 No alias 31-kDa RNA binding protein 0.03 Orthogroups_2024-Update
Seita.6G245600.1 No alias plastidial ribonucleoprotein *(CP31) 0.04 Orthogroups_2024-Update
Solyc03g111840 No alias RNA-binding protein (AHRD V3.3 *** A0A0K9NVY1_ZOSMR) 0.07 Orthogroups_2024-Update
evm.model.tig00000944.16 No alias (at5g50250 : 101.0) Encodes a RNA binding protein. A... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 110 179
IPR000504 RRM_dom 204 274
No external refs found!