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  5. Sopen03g039810

Sopen03g039810


Description : ABC-2 type transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen03g039810
Cluster HCCA clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
173584 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
A4A49_00289 No alias abc transporter g family member 32 0.02 Orthogroups_2024-Update
A4A49_38659 No alias pleiotropic drug resistance protein 1 0.02 Orthogroups_2024-Update
At1g15520 No alias ABC transporter G family member 40... 0.02 Orthogroups_2024-Update
Bradi1g35680 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Bradi4g28270 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Brara.G02000.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Brara.H02545.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Cre01.g007000 No alias pleiotropic drug resistance 3 0.02 Orthogroups_2024-Update
Cre04.g224400 No alias pleiotropic drug resistance 7 0.01 Orthogroups_2024-Update
GRMZM2G391815 No alias pleiotropic drug resistance 11 0.02 Orthogroups_2024-Update
Glyma.04G069800 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.07G015800 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.02 Orthogroups_2024-Update
Glyma.07G033500 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.14G127800 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.17G039200 No alias pleiotropic drug resistance 9 0.03 Orthogroups_2024-Update
Glyma.17G120100 No alias pleiotropic drug resistance 4 0.03 Orthogroups_2024-Update
Glyma.17G206300 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
HORVU3Hr1G053350.8 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
HORVU5Hr1G124650.12 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
MA_10426781g0010 No alias (at2g36380 : 1292.0) pleiotropic drug resistance 6... 0.02 Orthogroups_2024-Update
Mp4g05490.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
PSME_00000867-RA No alias (q8gu92|pdr2_orysa : 1758.0) Probable pleiotropic drug... 0.04 Orthogroups_2024-Update
PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00015395-RA No alias (q76cu2|pdr1_tobac : 1904.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
Potri.018G074500 No alias pleiotropic drug resistance 4 0.02 Orthogroups_2024-Update
Pp1s12_29V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Seita.4G181500.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.002G203800.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G215600.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sobic.005G183900.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sopen12g034820 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013581 PDR_assoc 745 808
IPR013525 ABC_2_trans 1224 1436
IPR013525 ABC_2_trans 528 739
IPR003439 ABC_transporter-like 192 374
IPR029481 ABC_trans_N 103 167
IPR003439 ABC_transporter-like 926 1078
No external refs found!