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  5. Sopen04g001730

Sopen04g001730


Description : Ribosomal protein S4/S9 N-terminal domain


Gene families : OG_42_0001595 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g001730
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
157263 No alias Ribosomal protein S4 0.13 Orthogroups_2024-Update
74302 No alias Ribosomal protein S4 0.12 Orthogroups_2024-Update
A4A49_39942 No alias 40s ribosomal protein s9-2 0.11 Orthogroups_2024-Update
A4A49_60535 No alias 40s ribosomal protein s9-2 0.09 Orthogroups_2024-Update
At5g15200 No alias 40S ribosomal protein S9-1... 0.02 Orthogroups_2024-Update
At5g39850 No alias 40S ribosomal protein S9-2... 0.03 Orthogroups_2024-Update
Bradi1g20580 No alias Ribosomal protein S4 0.15 Orthogroups_2024-Update
Bradi1g61090 No alias Ribosomal protein S4 0.1 Orthogroups_2024-Update
Bradi4g07120 No alias Ribosomal protein S4 0.21 Orthogroups_2024-Update
Bradi4g14160 No alias Ribosomal protein S4 0.21 Orthogroups_2024-Update
Brara.B00594.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Brara.C00655.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Brara.J01972.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Cre08.g359750 No alias Ribosomal protein S4 0.21 Orthogroups_2024-Update
GRMZM2G108348 No alias Ribosomal protein S4 0.1 Orthogroups_2024-Update
Glyma.04G171400 No alias Ribosomal protein S4 0.21 Orthogroups_2024-Update
Glyma.05G028000 No alias Ribosomal protein S4 0.11 Orthogroups_2024-Update
Glyma.06G192500 No alias Ribosomal protein S4 0.17 Orthogroups_2024-Update
Glyma.17G098600 No alias Ribosomal protein S4 0.21 Orthogroups_2024-Update
HORVU2Hr1G028510.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
HORVU5Hr1G038920.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Kfl00038_0240 kfl00038_0240_v1.1 (at5g39850 : 306.0) Ribosomal protein S4; FUNCTIONS IN:... 0.13 Orthogroups_2024-Update
MA_10429805g0030 No alias (at5g39850 : 342.0) Ribosomal protein S4; FUNCTIONS IN:... 0.08 Orthogroups_2024-Update
MA_10431745g0020 No alias (at5g39850 : 343.0) Ribosomal protein S4; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.13 Orthogroups_2024-Update
Potri.007G056100 No alias Ribosomal protein S4 0.13 Orthogroups_2024-Update
Potri.016G076800 No alias Ribosomal protein S4 0.04 Orthogroups_2024-Update
Pp1s13_410V6 No alias 40s ribosomal protein s9 0.06 Orthogroups_2024-Update
Pp1s14_31V6 No alias 40s ribosomal protein s9 0.14 Orthogroups_2024-Update
Pp1s223_95V6 No alias 40s ribosomal protein s9 0.24 Orthogroups_2024-Update
Pp1s47_40V6 No alias 40s ribosomal protein s9 0.06 Orthogroups_2024-Update
Pp1s91_122V6 No alias 40s ribosomal protein s9 0.05 Orthogroups_2024-Update
Seita.2G400200.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Seita.3G361100.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Seita.9G384200.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Sobic.002G384700.2 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Sobic.002G385100.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Sobic.008G100000.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Solyc01g010540 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.21 Orthogroups_2024-Update
Solyc01g010580 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.16 Orthogroups_2024-Update
Solyc04g005680 No alias Ribosomal protein (AHRD V3.3 *** B3TM27_ELAGV) 0.06 Orthogroups_2024-Update
Solyc05g007250 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.2 Orthogroups_2024-Update
evm.model.contig_2502.7 No alias (at5g15200 : 244.0) Ribosomal protein S4; FUNCTIONS IN:... 0.27 Orthogroups_2024-Update
evm.model.tig00000826.24 No alias (at5g15200 : 271.0) Ribosomal protein S4; FUNCTIONS IN:... 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 109 152
IPR001912 Ribosomal_S4/S9_N 12 64
No external refs found!