Sopen04g013740


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g013740
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Solyc02g005160 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g012650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g027290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g020190 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen06g008980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g024630 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g016720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g023540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g008510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g017070 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g013360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g019360 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 478 591
IPR025724 GAG-pre-integrase_dom 407 461
IPR013103 RVT_2 839 1082
No external refs found!