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  5. Solyc02g062620

Solyc02g062620


Description : Nuclear cap-binding protein (AHRD V3.3 *** B8YFW4_SOLTU)


Gene families : OG_42_0007295 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007295_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g062620
Cluster HCCA clusters: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
Potri.007G137400 No alias CAP-binding protein 20 0.03 Orthogroups_2024-Update
Sobic.004G212700.1 No alias component CBP20 of CBP80-CBP20 mRNA Cap-Binding complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004325 ferrochelatase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 106
No external refs found!