Sopen05g015450

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g015450
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
Solyc02g005160	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc05g050260	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc10g054830	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen01g016340	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen07g015960	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen08g004660	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen09g023290	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update
Sopen12g005690	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025314	DUF4219	19	44
IPR013103	RVT_2	659	900
IPR025724	GAG-pre-integrase_dom	273	324
IPR001584	Integrase_cat-core	342	453

External Links

No external refs found!