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  5. PSME_00000773-RA

PSME_00000773-RA


Description : (at2g44580 : 255.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 510.0) & (original description: no original description)


Gene families : OG_42_0002192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002192_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000773-RA
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
At2g44580 No alias Zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:F4IU60] 0.04 Orthogroups_2024-Update
PSME_00013425-RA No alias (at2g44580 : 254.0) zinc ion binding; CONTAINS InterPro... 0.05 Orthogroups_2024-Update
PSME_00024371-RA No alias (at2g44580 : 235.0) zinc ion binding; CONTAINS InterPro... 0.02 Orthogroups_2024-Update
PSME_00033716-RA No alias (at2g44580 : 241.0) zinc ion binding; CONTAINS InterPro... 0.03 Orthogroups_2024-Update
PSME_00036867-RA No alias (at2g44580 : 256.0) zinc ion binding; CONTAINS InterPro... 0.05 Orthogroups_2024-Update
PSME_00040667-RA No alias (at2g44580 : 270.0) zinc ion binding; CONTAINS InterPro... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007064 mitotic sister chromatid cohesion IEA InterProScan predictions
CC GO:0031390 Ctf18 RFC-like complex IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR019128 Dcc1 42 337
No external refs found!