PSME_00001545-RA

Description : (at1g29860 : 137.0) member of WRKY Transcription Factor; Group II-c; WRKY DNA-binding protein 71 (WRKY71); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 28 (TAIR:AT4G18170.1); Has 3523 Blast hits to 3068 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3507; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description)

Gene families : OG_42_0000005 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00001545-RA
Cluster	HCCA clusters: Cluster_222

Target	Alias	Description	ECC score	Gene Family Method
29146	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
81371	No alias	WRKY DNA-binding protein 9	0.03	Orthogroups_2024-Update
A4A49_07658	No alias	wrky transcription factor 6	0.03	Orthogroups_2024-Update
A4A49_07696	No alias	putative wrky transcription factor 33	0.03	Orthogroups_2024-Update
A4A49_12331	No alias	putative wrky transcription factor 71	0.04	Orthogroups_2024-Update
A4A49_13674	No alias	putative wrky transcription factor 48	0.04	Orthogroups_2024-Update
A4A49_20460	No alias	putative wrky transcription factor 23	0.04	Orthogroups_2024-Update
A4A49_27795	No alias	putative wrky transcription factor 53	0.04	Orthogroups_2024-Update
At2g37260	No alias	WRKY transcription factor 44...	0.04	Orthogroups_2024-Update
At3g58710	No alias	WRKY69 [Source:UniProtKB/TrEMBL;Acc:A0A178V7K8]	0.04	Orthogroups_2024-Update
At4g01250	No alias	WRKY transcription factor 22...	0.02	Orthogroups_2024-Update
At4g18170	No alias	WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]	0.02	Orthogroups_2024-Update
At5g07100	No alias	Probable WRKY transcription factor 26...	0.03	Orthogroups_2024-Update
At5g49520	No alias	Probable WRKY transcription factor 48...	0.03	Orthogroups_2024-Update
Bradi1g02327	No alias	WRKY family transcription factor family protein	0.02	Orthogroups_2024-Update
Bradi4g44342	No alias	WRKY DNA-binding protein 70	0.03	Orthogroups_2024-Update
Brara.B00978.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F02353.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.K00721.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G015433	No alias	WRKY DNA-binding protein 56	0.02	Orthogroups_2024-Update
GRMZM2G018721	No alias	WRKY DNA-binding protein 57	0.03	Orthogroups_2024-Update
GRMZM2G038158	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G398506	No alias	WRKY family transcription factor family protein	0.02	Orthogroups_2024-Update
GRMZM2G411766	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
Glyma.02G232600	No alias	WRKY DNA-binding protein 33	0.04	Orthogroups_2024-Update
Glyma.03G220800	No alias	WRKY DNA-binding protein 23	0.03	Orthogroups_2024-Update
Glyma.07G023300	No alias	WRKY DNA-binding protein 40	0.03	Orthogroups_2024-Update
Glyma.09G280200	No alias	WRKY DNA-binding protein 33	0.03	Orthogroups_2024-Update
Glyma.11G163300	No alias	WRKY DNA-binding protein 33	0.02	Orthogroups_2024-Update
Glyma.14G006800	No alias	zinc-dependent activator protein-1	0.03	Orthogroups_2024-Update
Glyma.14G016200	No alias	WRKY family transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.15G139000	No alias	WRKY DNA-binding protein 48	0.03	Orthogroups_2024-Update
Glyma.18G208800	No alias	WRKY DNA-binding protein 33	0.03	Orthogroups_2024-Update
Glyma.18G213200	No alias	WRKY DNA-binding protein 70	0.03	Orthogroups_2024-Update
Glyma.19G221700	No alias	WRKY family transcription factor	0.01	Orthogroups_2024-Update
HORVU3Hr1G058670.1	No alias	WRKY-type transcription factor	0.01	Orthogroups_2024-Update
HORVU5Hr1G046390.2	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
HORVU5Hr1G049030.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
HORVU7Hr1G113850.4	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os01g54600	No alias	WRKY13, expressed	0.02	Orthogroups_2024-Update
LOC_Os01g60490	No alias	WRKY22, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g43560	No alias	WRKY34, expressed	0.03	Orthogroups_2024-Update
LOC_Os03g20550	No alias	WRKY55, expressed	0.03	Orthogroups_2024-Update
LOC_Os12g02420	No alias	WRKY97, expressed	0.02	Orthogroups_2024-Update
MA_23415g0010	No alias	(at5g26170 : 117.0) member of WRKY Transcription Factor;...	0.03	Orthogroups_2024-Update
Mp7g06550.1	No alias	transcription factor (WRKY)	0.03	Orthogroups_2024-Update
PSME_00021156-RA	No alias	no hits & (original description: no original description)	0.05	Orthogroups_2024-Update
Potri.001G352400	No alias	WRKY DNA-binding protein 28	0.03	Orthogroups_2024-Update
Potri.002G164900	No alias	WRKY DNA-binding protein 43	0.02	Orthogroups_2024-Update
Potri.002G228400	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
Potri.003G138600	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
Potri.003G182200	No alias	WRKY DNA-binding protein 40	0.03	Orthogroups_2024-Update
Potri.004G060400	No alias	WRKY DNA-binding protein 65	0.03	Orthogroups_2024-Update
Potri.014G118200	No alias	WRKY DNA-binding protein 23	0.03	Orthogroups_2024-Update
Pp1s115_10V6	No alias	wrky transcription	0.03	Orthogroups_2024-Update
Pp1s158_166V6	No alias	wrky transcription	0.02	Orthogroups_2024-Update
Pp1s159_105V6	No alias	wrky11 - superfamily of tfs having wrky and zinc finger domains	0.04	Orthogroups_2024-Update
Pp1s235_126V6	No alias	wrky11 - superfamily of tfs having wrky and zinc finger domains	0.02	Orthogroups_2024-Update
Pp1s35_401V6	No alias	wrky transcription	0.03	Orthogroups_2024-Update
Pp1s5_354V6	No alias	wrky transcription	0.03	Orthogroups_2024-Update
Seita.1G062100.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Seita.3G131100.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G197100.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Seita.5G001000.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G008600.2	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G355000.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.003G341100.1	No alias	transcription factor *(WRKY33) & WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.004G065900.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.005G117400.2	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.007G118301.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G100500.1	No alias	transcription factor *(WRKY33) & WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G171600.1	No alias	transcription factor *(WRKY33) & WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.010G209100.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Solyc05g053380	No alias	WRKY transcription factor 48	0.02	Orthogroups_2024-Update
Solyc05g055750	No alias	WRKY transcription factor 34	0.02	Orthogroups_2024-Update
Solyc06g070990	No alias	WRKY transcription factor 74	0.02	Orthogroups_2024-Update
Solyc07g065260	No alias	WRKY transcription factor 18	0.02	Orthogroups_2024-Update
Solyc10g005680	No alias	WRKY transcription factor 15	0.03	Orthogroups_2024-Update
Sopen01g038890	No alias	WRKY DNA -binding domain	0.04	Orthogroups_2024-Update
Sopen02g033030	No alias	WRKY DNA -binding domain	0.02	Orthogroups_2024-Update
Sopen08g004130	No alias	WRKY DNA -binding domain	0.03	Orthogroups_2024-Update
Sopen09g005680	No alias	WRKY DNA -binding domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006766	vitamin metabolic process	IEP	Predicted GO
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predicted GO
BP	GO:0006772	thiamine metabolic process	IEP	Predicted GO
BP	GO:0006814	sodium ion transport	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0009110	vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0009228	thiamine biosynthetic process	IEP	Predicted GO
BP	GO:0009250	glucan biosynthetic process	IEP	Predicted GO
BP	GO:0010215	cellulose microfibril organization	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
BP	GO:0016049	cell growth	IEP	Predicted GO
BP	GO:0030198	extracellular matrix organization	IEP	Predicted GO
CC	GO:0031225	anchored component of membrane	IEP	Predicted GO
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predicted GO
BP	GO:0040007	growth	IEP	Predicted GO
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0043062	extracellular structure organization	IEP	Predicted GO
BP	GO:0051273	beta-glucan metabolic process	IEP	Predicted GO
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	309	329

External Links

No external refs found!

PSME_00001545-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation