1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00002061-RA

PSME_00002061-RA


Description : (at3g19950 : 146.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink). & (reliability: 276.0) & (original description: no original description)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002061-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
A4A49_41691 No alias e3 ubiquitin-protein ligase sdir1 0.02 Orthogroups_2024-Update
HORVU5Hr1G046250.24 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os02g49550 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g22830 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04590 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 Orthogroups_2024-Update
PSME_00020804-RA No alias (at3g19950 : 87.4) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Seita.5G351000.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.9G178700.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 146 188
IPR039525 RNF126-like_zinc-ribbon 6 38
No external refs found!