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  5. PSME_00002247-RA

PSME_00002247-RA


Description : (at5g44400 : 388.0) FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44390.1); Has 6440 Blast hits to 6338 proteins in 980 species: Archae - 110; Bacteria - 3349; Metazoa - 50; Fungi - 1662; Plants - 680; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink). & (reliability: 776.0) & (original description: no original description)


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002247-RA
Cluster HCCA clusters: Cluster_682

Target Alias Description ECC score Gene Family Method Actions
A4A49_00769 No alias reticuline oxidase-like protein 0.03 Orthogroups_2024-Update
At1g11770 No alias Berberine bridge enzyme-like 2... 0.03 Orthogroups_2024-Update
At2g34810 No alias Berberine bridge enzyme-like 16... 0.02 Orthogroups_2024-Update
Bradi1g38250 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Bradi4g18970 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Brara.E00947.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Brara.K00501.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.K01807.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Glyma.04G113400 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.08G059000 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Glyma.15G133200 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G020240.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
MA_132990g0010 No alias (at4g20860 : 342.0) FAD-binding Berberine family... 0.03 Orthogroups_2024-Update
MA_162773g0010 No alias (at4g20860 : 377.0) FAD-binding Berberine family... 0.04 Orthogroups_2024-Update
MA_5468901g0010 No alias (at5g44400 : 157.0) FAD-binding Berberine family... 0.02 Orthogroups_2024-Update
MA_613919g0010 No alias (at5g44390 : 411.0) FAD-binding Berberine family... 0.04 Orthogroups_2024-Update
Potri.001G440700 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Potri.001G459100 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Potri.001G459500 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.001G462200 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Potri.001G463300 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.011G160900 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.019G063400 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Pp1s128_133V6 No alias fad-binding protein 0.03 Orthogroups_2024-Update
Seita.6G055100.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Seita.6G216800.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Sobic.010G162700.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Sobic.010G162900.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Solyc02g070110 No alias FAD-binding Berberine family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc02g079450 No alias FAD-binding Berberine family protein (AHRD V3.3 *** AT5G44360.2) 0.03 Orthogroups_2024-Update
Solyc10g054530 No alias FAD-binding Berberine family protein, putative (AHRD... 0.02 Orthogroups_2024-Update
Sopen02g019250 No alias Berberine and berberine like 0.03 Orthogroups_2024-Update
Sopen03g002700 No alias Berberine and berberine like 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR012951 BBE 416 473
IPR006094 Oxid_FAD_bind_N 30 166
No external refs found!