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  5. PSME_00002640-RA

PSME_00002640-RA


Description : (at4g13650 : 724.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 139.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1448.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002640-RA
Cluster HCCA clusters: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
30095 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g15510 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.03 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g58370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g75980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g25480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g20480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g40340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g41840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.E00543.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G462625 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G016600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G080120.11 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os08g04400 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os09g15800 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
MA_10429371g0010 No alias (at3g57430 : 716.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_50118g0010 No alias (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_59148g0010 No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00014882-RA No alias (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G022466 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G135600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G126600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G243300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G312700.1 No alias RNA editing factor *(MEF25) 0.02 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update
Solyc01g095690 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc10g054730 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g041720 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g039140 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen04g026710 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g022760 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 90 119
IPR002885 Pentatricopeptide_repeat 765 789
IPR032867 DYW_dom 964 1088
IPR002885 Pentatricopeptide_repeat 188 234
IPR002885 Pentatricopeptide_repeat 689 737
IPR002885 Pentatricopeptide_repeat 588 636
IPR002885 Pentatricopeptide_repeat 487 535
IPR002885 Pentatricopeptide_repeat 791 838
IPR002885 Pentatricopeptide_repeat 386 433
IPR002885 Pentatricopeptide_repeat 286 333
No external refs found!