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  5. PSME_00003270-RA

PSME_00003270-RA


Description : (at5g60020 : 723.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 17 (LAC17); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 2 (TAIR:AT2G29130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 209.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1446.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003270-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
80214 No alias laccase 12 0.03 Orthogroups_2024-Update
A4A49_13303 No alias laccase-7 0.03 Orthogroups_2024-Update
A4A49_15209 No alias laccase-4 0.05 Orthogroups_2024-Update
A4A49_19445 No alias laccase-4 0.02 Orthogroups_2024-Update
A4A49_20277 No alias laccase-11 0.05 Orthogroups_2024-Update
At2g30210 No alias Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YT0] 0.04 Orthogroups_2024-Update
At5g01190 No alias Laccase-10 [Source:UniProtKB/Swiss-Prot;Acc:Q6ID18] 0.06 Orthogroups_2024-Update
Bradi1g66720 No alias laccase 17 0.03 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.05 Orthogroups_2024-Update
Bradi2g54690 No alias laccase 17 0.05 Orthogroups_2024-Update
Bradi3g59187 No alias laccase 14 0.03 Orthogroups_2024-Update
Brara.B01051.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Brara.H02436.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
Brara.J01366.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Brara.J02661.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
GRMZM2G447271 No alias laccase 17 0.03 Orthogroups_2024-Update
Glyma.01G112600 No alias Laccase/Diphenol oxidase family protein 0.04 Orthogroups_2024-Update
Glyma.01G173600 No alias laccase 11 0.02 Orthogroups_2024-Update
Glyma.03G077900 No alias Laccase/Diphenol oxidase family protein 0.05 Orthogroups_2024-Update
Glyma.08G359100 No alias laccase 17 0.04 Orthogroups_2024-Update
Glyma.08G359300 No alias laccase 17 0.02 Orthogroups_2024-Update
Glyma.11G069500 No alias laccase 11 0.02 Orthogroups_2024-Update
Glyma.11G069600 No alias laccase 11 0.02 Orthogroups_2024-Update
Glyma.11G233400 No alias laccase 5 0.03 Orthogroups_2024-Update
Glyma.12G121700 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G072530.7 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
LOC_Os01g27700 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g44330 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.006G087100 No alias laccase 17 0.06 Orthogroups_2024-Update
Potri.006G087500 No alias laccase 17 0.03 Orthogroups_2024-Update
Potri.008G064000 No alias Laccase/Diphenol oxidase family protein 0.06 Orthogroups_2024-Update
Potri.008G073700 No alias laccase 5 0.05 Orthogroups_2024-Update
Potri.010G193100 No alias Laccase/Diphenol oxidase family protein 0.05 Orthogroups_2024-Update
Potri.011G120300 No alias laccase 17 0.05 Orthogroups_2024-Update
Potri.015G040700 No alias laccase 1 0.03 Orthogroups_2024-Update
Potri.016G106000 No alias laccase 7 0.04 Orthogroups_2024-Update
Potri.016G112000 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Potri.019G124300 No alias laccase 3 0.03 Orthogroups_2024-Update
Seita.1G320800.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.3G297100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.8G252500.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Seita.9G453900.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Sobic.004G236100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Solyc02g085110 No alias Laccase (AHRD V3.3 *** I1J8U1_SOYBN) 0.03 Orthogroups_2024-Update
Solyc09g010990 No alias Laccase (AHRD V3.3 *** M1AHK0_SOLTU) 0.03 Orthogroups_2024-Update
Solyc09g014240 No alias Laccase (AHRD V3.3 *** P93366_TOBAC) 0.03 Orthogroups_2024-Update
Solyc10g085090 No alias Laccase (AHRD V3.3 *** P93366_TOBAC) 0.03 Orthogroups_2024-Update
Sopen02g029800 No alias Multicopper oxidase 0.04 Orthogroups_2024-Update
Sopen09g005780 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 970 1086
IPR011707 Cu-oxidase_3 564 671
IPR011707 Cu-oxidase_3 111 224
IPR001117 Cu-oxidase 243 346
IPR001117 Cu-oxidase 686 836
No external refs found!